TBX1, T-box transcription factor 1, 6899

N. diseases: 417; N. variants: 14
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1978060
rs1978060
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C1837461
Disease:
SCOLIOSIS, ISOLATED, SUSCEPTIBILITY TO, 3
G 0.700 GeneticVariation GWASCAT Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese. 31417091 2019
dbSNP: rs1978060
rs1978060
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0410702
Disease:
Adolescent idiopathic scoliosis
G 0.700 GeneticVariation GWASCAT Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese. 31417091 2019
dbSNP: rs12165908
rs12165908
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0010068
Disease:
Coronary heart disease
0.010 GeneticVariation BEFREE Genotype analyses revealed that minor alleles in <i>TBX1</i>: rs12165908 C > G [odds ratio (OR) = 2.64; 95% confidence interval (CI) = 1.87-3.73, <i>p</i> = 3.03 × 10<sup>-8</sup>] and <i>GATA6</i>: rs143085291 C > T (OR = 2.49; 95% CI = 1.18-5.29, <i>p</i> = 0.01) increased CHD risk significantly. 31013439 2019
dbSNP: rs41298006
rs41298006
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C3274516
Disease:
Single Ventricle Defect
0.010 GeneticVariation BEFREE The minor allele C in <i>GATA4</i>: rs17153694 T > C increased the risk of tetralogy of Fallot, whereas minor alleles in <i>TBX1</i>: rs41298006 G>A, <i>FGF10</i>: rs75629618 C>T, <i>FGF10:</i> rs10461755 G>A, <i>FGF10:</i> rs75632187 A>G, and <i>FGF10:</i> rs12518964 G > A were associated with increased risk of single ventricle. 31013439 2019
dbSNP: rs41298006
rs41298006
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0152424
Disease:
Common ventricle
0.010 GeneticVariation BEFREE The minor allele C in <i>GATA4</i>: rs17153694 T > C increased the risk of tetralogy of Fallot, whereas minor alleles in <i>TBX1</i>: rs41298006 G>A, <i>FGF10</i>: rs75629618 C>T, <i>FGF10:</i> rs10461755 G>A, <i>FGF10:</i> rs75632187 A>G, and <i>FGF10:</i> rs12518964 G > A were associated with increased risk of single ventricle. 31013439 2019
dbSNP: rs749275495
rs749275495
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0266642
Disease:
Situs ambiguus
0.010 GeneticVariation BEFREE Sequence analysis identified three missense variants in three individuals, including a subject with isolated AVSD [p.(Ala367Val)], an individual with AVSD and heterotaxy [p.(Val210Met)], and a subject with AVSD, heterotaxy, and oculo-auriculo-vertebral spectrum (OAVS) [p.(Ala696Thr)], respectively. 30007050 2018
dbSNP: rs749275495
rs749275495
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C1389018
Disease:
Atrioventricular Septal Defect
0.010 GeneticVariation BEFREE Sequence analysis identified three missense variants in three individuals, including a subject with isolated AVSD [p.(Ala367Val)], an individual with AVSD and heterotaxy [p.(Val210Met)], and a subject with AVSD, heterotaxy, and oculo-auriculo-vertebral spectrum (OAVS) [p.(Ala696Thr)], respectively. 30007050 2018
dbSNP: rs749275495
rs749275495
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C1389016
Disease:
ATRIOVENTRICULAR CANAL DEFECT
0.010 GeneticVariation BEFREE Sequence analysis identified three missense variants in three individuals, including a subject with isolated AVSD [p.(Ala367Val)], an individual with AVSD and heterotaxy [p.(Val210Met)], and a subject with AVSD, heterotaxy, and oculo-auriculo-vertebral spectrum (OAVS) [p.(Ala696Thr)], respectively. 30007050 2018
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR 22q11.2 Deletion Syndrome: Laboratory Diagnosis and TBX1 and FGF8 Mutation Screening. 27617111 2015
dbSNP: rs74315522
rs74315522
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0220704
Disease:
Shprintzen syndrome
0.800 GeneticVariation UNIPROT Noninvasive prenatal screening for fetal aneuploidy, 2016 update: a position statement of the American College of Medical Genetics and Genomics. 27467454 2016
dbSNP: rs41298838
rs41298838
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0012236
Disease:
DiGeorge Syndrome
0.700 GeneticVariation UNIPROT Noninvasive prenatal screening for fetal aneuploidy, 2016 update: a position statement of the American College of Medical Genetics and Genomics. 27467454 2016
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR Copy number variations in 119 Chinese children with idiopathic short stature identified by the custom genome-wide microarray. 26884814 2016
dbSNP: rs41297816
rs41297816
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0036341
Disease:
Schizophrenia
G 0.700 GeneticVariation GWASCAT Genome-wide association study of schizophrenia in Ashkenazi Jews. 26198764 2015
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR 22q11 deletion syndrome: current perspective. 26056486 2015
dbSNP: rs74315522
rs74315522
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0220704
Disease:
Shprintzen syndrome
0.800 GeneticVariation UNIPROT Practical guidelines for managing adults with 22q11.2 deletion syndrome. 25569435 2015
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR Practical guidelines for managing adults with 22q11.2 deletion syndrome. 25569435 2015
dbSNP: rs2238776
rs2238776
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0600139
Disease:
Prostate carcinoma
G 0.700 GeneticVariation GWASCAT A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. 25217961 2014
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR Novel TBX1 loss-of-function mutation causes isolated conotruncal heart defects in Chinese patients without 22q11.2 deletion. 24998776 2014
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR Understanding the role of Tbx1 as a candidate gene for 22q11.2 deletion syndrome. 23996541 2013
dbSNP: rs1274480565
rs1274480565
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0266642
Disease:
Situs ambiguus
0.010 GeneticVariation BEFREE Three potentially disease-related missense mutations were detected: c.49G > T (Gly17Cys) in a female with isolated DORV, c.98C > T (Ala33Val) in a male with isolated d-TGA, and c.841C > T (His281Tyr) in a female with sporadic heterotaxy. 23427188 2013
dbSNP: rs1274480565
rs1274480565
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0013069
Disease:
Double Outlet Right Ventricle
0.010 GeneticVariation BEFREE Three potentially disease-related missense mutations were detected: c.49G > T (Gly17Cys) in a female with isolated DORV, c.98C > T (Ala33Val) in a male with isolated d-TGA, and c.841C > T (His281Tyr) in a female with sporadic heterotaxy. 23427188 2013
dbSNP: rs2238776
rs2238776
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C2697758
Disease:
Interleukin 10 Measurement
A 0.700 GeneticVariation GWASCAT Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans. 22205395 2012
dbSNP: rs1329122220
rs1329122220
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0028754
Disease:
Obesity
0.010 GeneticVariation BEFREE Even though transmission disequilibrium test (TDT) further supported the association of P352T and +2,004 -/inst T with obesity, none of these nominal associations remained significant after a multiple testing Bonferroni correction. 20075856 2010
dbSNP: rs1555896474
rs1555896474
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0432072
Disease:
Dysmorphic features
G 0.700 CausalMutation CLINVAR Velo-cardio-facial syndrome: 30 Years of study. 18636631 2008
dbSNP: rs74315522
rs74315522
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
CUI: C0220704
Disease:
Shprintzen syndrome
0.800 GeneticVariation UNIPROT We report a novel heterozygous missense mutation, H194Q, in a familial case of Shprintzen syndrome and show that this and the two previously reported missense mutations result in gain of function, possibly through stabilization of the protein dimer DNA complex. 17273972 2007